Index

C

count_deletions() (in module metrics) (in module metrics.metrics) count_insertions() (in module metrics) (in module metrics.metrics)

count_snvs() (in module metrics) (in module metrics.metrics) cross_contamination_rate() (in module metrics) (in module metrics.metrics)

I

insert_size_std_deviation() (in module metrics) (in module metrics.metrics)

M

mad_autosome_coverage() (in module metrics) (in module metrics.metrics) mean_autosome_coverage() (in module metrics) (in module metrics.metrics) mean_insert_size() (in module metrics) (in module metrics.metrics)

metrics module metrics.metrics module module metrics metrics.metrics

P

pct_autosomes_15x() (in module metrics) (in module metrics.metrics) pct_reads_mapped() (in module metrics) (in module metrics.metrics)

pct_reads_properly_paired() (in module metrics) (in module metrics.metrics)

R

ratio_heterozygous_homzygous_indel() (in module metrics) (in module metrics.metrics) ratio_heterozygous_homzygous_snv() (in module metrics) (in module metrics.metrics)

ratio_insertion_deletion() (in module metrics) (in module metrics.metrics) ratio_transitions_transversions() (in module metrics) (in module metrics.metrics)

Y

yield_bp_q30() (in module metrics) (in module metrics.metrics)