Functions
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Description: Estimation of inter-sample contamination rate of short paired-end sequencing high quality, non duplicated reads, primary alignments, mapped on GRCh38 assembly. |
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Description: The insert size standard deviation of short paired-end sequencing high quality reads, primary alignments, mapped on GRCh38 assembly. |
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Description: The median absolute deviation of sequencing coverage derived from short paired-end sequencing high quality, non duplicated reads, primary alignments, achieving a base quality of 20 or greater and mapping quality of 20 or greater, in autosomes non gap regions of GRCh38 assembly. |
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Description: The mean sequencing coverage derived from short paired-end sequencing high quality, non duplicated reads, primary alignments, achieving a base quality of 20 or greater and mapping quality of 20 or greater, in autosomes non gap regions of GRCh38 assembly. |
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Description: The mean insert size of short paired-end sequencing high quality reads, primary alignments, mapped on GRCh38 assembly. |
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Description: The percentage of bases attaining at least 15X sequencing coverage in short paired-end sequencing high quality, non duplicated reads, primary alignments, achieving a base quality of 20 or greater and mapping quality of 20 or greater, in autosomes non gap regions of GRCh38 assembly. |
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Description: The percentage of short paired-end sequencing high quality reads, primary alignments, mapped on GRCh38 assembly. |
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Description: The percentage of short paired-end sequencing high quality, properly paired reads, primary alignments, mapped on GRCh38 assembly. |
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Description: The number of bases in short paired-end sequencing high quality reads, primary alignments, achieving a base quality score of 30 or greater (Phred scale). |