count_snvs

metrics.count_snvs(mqc, biosample_id)

Description: The number of variant type SNVs in VCF, only in autosomal regions, high quality variants.

Implementation details: In the NPM-sample-QC reference implementation, calculate the number of variant type SNVs in VCF, only in autosomal regions, high quality variants by bcftools view. (bcftools view -H -v snps -f PASS)