insert_size_std_deviation

metrics.insert_size_std_deviation(mqc, biosample_id)

Description: The insert size standard deviation of short paired-end sequencing high quality reads, primary alignments, mapped on GRCh38 assembly. Duplicated reads and clipped bases are included. No minimum mapping quality is imposed.

Implementation details: In the NPM-sample-QC reference implementation it is computed using samtools stats, reporting the insert_size_standard_deviation field. Duplicated reads are included. No mapping qualiy is applied.